Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC111225808Jade family PHD finger 1. (957 aa)    
Predicted Functional Partners:
meaf6
MYST/Esa1-associated factor 6.
    
 0.887
ing4
Inhibitor of growth protein.
    
 0.864
ing5
Inhibitor of growth protein.
    
 0.796
vhl
Von Hippel-Lindau tumor suppressor.
    
 
 0.620
snap29
Synaptosome associated protein 29.
    
 
 0.607
camkk1
Calcium/calmodulin-dependent protein kinase kinase 1, alpha a.
   
  
 0.573
kat6a
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.570
LOC111229984
Potassium inwardly-rectifying channel, subfamily J, member 14.
      
 0.563
nenf
Neudesin neurotrophic factor; Belongs to the cytochrome b5 family.
      
 0.550
pacc1
Proton activated chloride channel 1.
      
 0.540
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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