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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
riox1Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase. (546 aa)    
Predicted Functional Partners:
rpl8
Ribosomal protein L8.
    
 
 0.941
skida1
SKI/DACH domain containing 1.
      
 0.605
mrpl2
Mitochondrial ribosomal protein L2.
    
 
 0.602
hspbap1
Hspb associated protein 1.
      
 0.589
jmjd4
Jumonji domain containing 4.
      
 0.589
kdm8
Lysine (K)-specific demethylase 8.
      
 0.534
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.524
usp7
Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.
      
 0.472
ENSSDUP00000009930
RIO kinase 1 (yeast).
      
 0.451
tgfbrap1
Transforming growth factor, beta receptor associated protein 1.
      
 0.424
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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