Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111222206Zinc finger protein 710b. (691 aa)    
Predicted Functional Partners:
bcl7b
BAF chromatin remodeling complex subunit BCL7B b.
     
 0.636
rps6kl1
Ribosomal protein S6 kinase-like 1.
    
 
 0.632
osbpl9
Oxysterol-binding protein; Belongs to the OSBP family.
   
 
 0.617
naa35
N(alpha)-acetyltransferase 35, NatC auxiliary subunit.
   
  
 0.614
rexo4
REX4 homolog, 3'-5' exonuclease.
    
 
 0.611
pold1
DNA polymerase.
   
 0.582
suds3
SDS3 homolog, SIN3A corepressor complex component.
    
 0.525
dalrd3
DALR anticodon binding domain containing 3.
    
 
 0.520
LOC111235896
Galectin.
    
 
 0.503
gtf3c3
General transcription factor IIIC, polypeptide 3.
    
 0.502
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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