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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serf2Small EDRK-rich factor 2. (75 aa)    
Predicted Functional Partners:
cdv3
Carnitine deficiency-associated gene expressed in ventricle 3.
      
 0.590
lrrc57
Leucine rich repeat containing 57.
      
 0.495
tma7
Uncharacterized protein.
   
    0.493
dap
Death-associated protein.
      
 0.489
hypk
Huntingtin interacting protein K.
   
  
 0.488
zfyve19
Zinc finger, FYVE domain containing 19.
      
 0.459
LOC111220441
Pdgfa associated protein 1a.
      
 0.433
pdap1
Pdgfa associated protein 1b.
      
 0.433
SNCA
Synuclein alpha; Belongs to the synuclein family.
    
 
 0.426
nfs1
NFS1 cysteine desulfurase.
      
 0.418
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.