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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptp4a2Protein tyrosine phosphatase 4A2b. (174 aa)    
Predicted Functional Partners:
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.706
ENSSDUP00000001031
Cyclin and CBS domain divalent metal cation transport mediator 4a.
    
 
 0.445
cnnm3
Uncharacterized protein.
    
 
 0.445
LOC111228013
Uncharacterized protein.
    
 
 0.445
cnnm2
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.445
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.442
CNNM1-2
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.442
phf3
PHD finger protein 3.
 
    
 0.422
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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