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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111238865Uncharacterized protein. (330 aa)    
Predicted Functional Partners:
LOC111220430
Fam20C domain-containing protein.
    
  0.438
LOC111227056
FAM20C golgi associated secretory pathway kinase a.
    
  0.438
LOC111222069
Calreticulin.
   
 
 0.419
LOC111231152
Calreticulin.
   
 
 0.419
LOC111231847
Calreticulin.
   
 
 0.419
fam20b
FAM20B glycosaminoglycan xylosylkinase.
     
 0.412
LOC111216630
Family with sequence similarity 20 member C, like.
    
  0.401
LOC111230346
Fam20C domain-containing protein.
    
  0.401
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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