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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtmr6Myotubularin related protein 6. (659 aa)    
Predicted Functional Partners:
FIG4
FIG4 phosphoinositide 5-phosphatase.
   
 
 0.931
LOC111220862
SAC domain-containing protein.
     
 0.925
inpp5f
Inositol polyphosphate-5-phosphatase F.
     
 0.907
inpp4b
Inositol polyphosphate-4-phosphatase type II B.
     
 0.906
cdipt
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
     
 0.905
ENSSDUP00000008486
Si:dkey-152b24.6.
     
  0.900
LOC111223493
Si:dkey-266f7.9.
     
  0.900
LOC111225551
Zgc:154055.
  
0.848
mtmr9
Myotubularin related protein 9.
  
0.843
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.763
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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