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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111231504RNA binding fox-1 homolog 2. (456 aa)    
Predicted Functional Partners:
LOC111236803
RNA binding motif protein 24b.
  
 
 0.658
RBM38
RNA binding motif protein 38.
  
 
 0.652
LOC111217388
RRM domain-containing protein.
  
 
 0.651
rbm24
RNA binding motif protein 24a.
  
 
0.561
RBPMS
RNA binding protein, mRNA processing factor.
   
 
 0.525
mecp2
Methyl CpG binding protein 2.
     
 0.488
ENSSDUP00000018129
QKI, KH domain containing, RNA binding b.
   
 
 0.456
LOC111219821
QKI, KH domain containing, RNA binding 2.
   
 
 0.456
LOC111226201
QKI, KH domain containing, RNA binding a.
   
 
 0.456
ENSSDUP00000003208
Uncharacterized protein.
  
 
 
 0.444
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.