LOC111238303 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111238303

Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (144 aa)

Predicted Functional Partners:

rps3

0.999

RPS20

0.999

rps2

0.999

rps9

0.999

fau

0.999

rps18

0.999

rps15

0.999

LOC111230296

0.999

eif2s2

0.999

rps11

0.999

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111230296	LOC111238303	ENSSDUP00000020280	ENSSDUP00000005900	Eukaryotic translation initiation factor 1B.	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.999
LOC111230296	RPS20	ENSSDUP00000020280	ENSSDUP00000007734	Eukaryotic translation initiation factor 1B.	Ribosomal protein S20.	0.994
LOC111230296	eif2s2	ENSSDUP00000020280	ENSSDUP00000022307	Eukaryotic translation initiation factor 1B.	Eukaryotic translation initiation factor 2, subunit 2 beta.	0.988
LOC111230296	fau	ENSSDUP00000020280	ENSSDUP00000013032	Eukaryotic translation initiation factor 1B.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
LOC111230296	rps11	ENSSDUP00000020280	ENSSDUP00000025025	Eukaryotic translation initiation factor 1B.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.995
LOC111230296	rps15	ENSSDUP00000020280	ENSSDUP00000017559	Eukaryotic translation initiation factor 1B.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.992
LOC111230296	rps18	ENSSDUP00000020280	ENSSDUP00000016710	Eukaryotic translation initiation factor 1B.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.993
LOC111230296	rps2	ENSSDUP00000020280	ENSSDUP00000011249	Eukaryotic translation initiation factor 1B.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.993
LOC111230296	rps3	ENSSDUP00000020280	ENSSDUP00000005877	Eukaryotic translation initiation factor 1B.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.996
LOC111230296	rps9	ENSSDUP00000020280	ENSSDUP00000011944	Eukaryotic translation initiation factor 1B.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.994
LOC111238303	LOC111230296	ENSSDUP00000005900	ENSSDUP00000020280	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Eukaryotic translation initiation factor 1B.	0.999
LOC111238303	RPS20	ENSSDUP00000005900	ENSSDUP00000007734	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Ribosomal protein S20.	0.999
LOC111238303	eif2s2	ENSSDUP00000005900	ENSSDUP00000022307	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Eukaryotic translation initiation factor 2, subunit 2 beta.	0.999
LOC111238303	fau	ENSSDUP00000005900	ENSSDUP00000013032	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
LOC111238303	rps11	ENSSDUP00000005900	ENSSDUP00000025025	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.999
LOC111238303	rps15	ENSSDUP00000005900	ENSSDUP00000017559	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
LOC111238303	rps18	ENSSDUP00000005900	ENSSDUP00000016710	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.999
LOC111238303	rps2	ENSSDUP00000005900	ENSSDUP00000011249	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
LOC111238303	rps3	ENSSDUP00000005900	ENSSDUP00000005877	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
LOC111238303	rps9	ENSSDUP00000005900	ENSSDUP00000011944	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.999

page 1 of 6

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About