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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPTC7Protein phosphatase; Belongs to the PP2C family. (297 aa)    
Predicted Functional Partners:
mtfmt
Mitochondrial methionyl-tRNA formyltransferase.
  
   0.500
stk16
Serine/threonine kinase 16.
   
  
 0.452
zer1
Zyg-11 related, cell cycle regulator.
      
 0.430
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
   
 0.414
pdhb
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.414
tab3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
   
 0.412
LOC111234875
N-acetyltransferase domain-containing protein.
   
  
 0.409
LOC111233597
Si:ch211-81n22.1.
   
  
 0.409
pdp1
Pyruvate dehyrogenase phosphatase catalytic subunit 1.
    
 
 0.402
LOC111228539
Putative pyruvate dehydrogenase phosphatase isoenzyme 2.
    
 
 0.402
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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