STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppp1ccSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)    
Predicted Functional Partners:
LOC111217994
Protein phosphatase 1 regulatory subunit.
   
 0.968
LOC111229837
Protein phosphatase 1 regulatory subunit.
   
 0.968
LOC111238191
PRKG1_interact domain-containing protein.
   
 0.968
rb1
Retinoblastoma 1.
   
 0.963
eif2s1
Eukaryotic translation initiation factor 2, subunit 1 alpha b.
   
 0.958
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
  
0.947
LOC111226896
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
  
0.947
LOC111233740
Retinoblastoma-like 2 (p130).
   
 0.942
rbl1
Retinoblastoma-like 1 (p107).
   
 0.942
ppp1r14a
Uncharacterized protein.
     
 0.937
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.