STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syt6Synaptotagmin VIa. (458 aa)    
Predicted Functional Partners:
LOC111217580
Intersectin 2b.
     
 0.646
itsn2
Intersectin 2a.
     
 0.646
ENSSDUP00000000294
PDZ domain-containing protein.
     
 0.528
RIMS2
Regulating synaptic membrane exocytosis 2.
     
0.528
itsn1
Intersectin 1 (SH3 domain protein).
     
 0.455
vps53
VPS53 subunit of GARP complex.
   
  
 0.406
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.