zranb2 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

zranb2

Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family. (314 aa)

Predicted Functional Partners:

Srek1

0.693

gtf2f1

0.669

fosb

0.667

rpl32

0.665

taf12

0.641

ENSSDUP00000011863

0.636

taf3

0.630

fam76b

0.626

taf13

0.623

SRSF11

0.613

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000011863	fosb	ENSSDUP00000011863	ENSSDUP00000025484	Uncharacterized protein.	FBJ murine osteosarcoma viral oncogene homolog B.	0.469
ENSSDUP00000011863	rpl32	ENSSDUP00000011863	ENSSDUP00000021027	Uncharacterized protein.	Ribosomal protein L32.	0.561
ENSSDUP00000011863	zranb2	ENSSDUP00000011863	ENSSDUP00000006015	Uncharacterized protein.	Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family.	0.636
SRSF11	gtf2f1	ENSSDUP00000006191	ENSSDUP00000000844	Serine and arginine rich splicing factor 11.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.539
SRSF11	zranb2	ENSSDUP00000006191	ENSSDUP00000006015	Serine and arginine rich splicing factor 11.	Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family.	0.613
Srek1	gtf2f1	ENSSDUP00000014285	ENSSDUP00000000844	RRM domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.630
Srek1	zranb2	ENSSDUP00000014285	ENSSDUP00000006015	RRM domain-containing protein.	Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family.	0.693
fam76b	gtf2f1	ENSSDUP00000017216	ENSSDUP00000000844	Transcription initiation factor TFIID subunit.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.985
fam76b	taf12	ENSSDUP00000017216	ENSSDUP00000012766	Transcription initiation factor TFIID subunit.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
fam76b	taf13	ENSSDUP00000017216	ENSSDUP00000024965	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 13.	0.999
fam76b	taf3	ENSSDUP00000017216	ENSSDUP00000031350	Transcription initiation factor TFIID subunit.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.996
fam76b	zranb2	ENSSDUP00000017216	ENSSDUP00000006015	Transcription initiation factor TFIID subunit.	Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family.	0.626
fosb	ENSSDUP00000011863	ENSSDUP00000025484	ENSSDUP00000011863	FBJ murine osteosarcoma viral oncogene homolog B.	Uncharacterized protein.	0.469
fosb	rpl32	ENSSDUP00000025484	ENSSDUP00000021027	FBJ murine osteosarcoma viral oncogene homolog B.	Ribosomal protein L32.	0.563
fosb	zranb2	ENSSDUP00000025484	ENSSDUP00000006015	FBJ murine osteosarcoma viral oncogene homolog B.	Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family.	0.667
gtf2f1	SRSF11	ENSSDUP00000000844	ENSSDUP00000006191	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Serine and arginine rich splicing factor 11.	0.539
gtf2f1	Srek1	ENSSDUP00000000844	ENSSDUP00000014285	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RRM domain-containing protein.	0.630
gtf2f1	fam76b	ENSSDUP00000000844	ENSSDUP00000017216	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription initiation factor TFIID subunit.	0.985
gtf2f1	taf12	ENSSDUP00000000844	ENSSDUP00000012766	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.960
gtf2f1	taf13	ENSSDUP00000000844	ENSSDUP00000024965	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TATA-box binding protein associated factor 13.	0.946