STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111234889Zinc finger and BTB domain containing 48. (772 aa)    
Predicted Functional Partners:
nol9
Nucleolar protein 9.
      
 0.607
naif1
Nuclear apoptosis inducing factor 1.
   
  
 0.603
stk11ip
Serine/threonine kinase 11 interacting protein.
   
    0.596
dclre1b
DNA cross-link repair 1B.
    
 
 0.577
srbd1
S1 RNA binding domain 1.
    
 
 0.497
terf1
Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.
    
 0.451
crbn
Cereblon.
    
 
 0.426
KDM1B
Lysine demethylase 1B.
    
 0.426
ENSSDUP00000011667
Telomere repeat binding bouquet formation protein 2.
      
 0.418
aldh4a1
Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.403
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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