close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111237786T-box transcription factor 5a. (524 aa)    
Predicted Functional Partners:
LOC111226631
NK2 homeobox 5.
   
 
 0.874
yap1
Yes-associated protein 1.
    
 0.732
gata4
GATA binding protein 4.
   
 
 0.677
hand2
Heart and neural crest derivatives expressed 2.
   
 0.641
ENSSDUP00000002071
Natriuretic peptide A.
     
 0.579
mef2c
Myocyte enhancer factor 2cb.
      
 0.512
gata6
GATA binding protein 6.
   
 
 0.505
bmp4
Bone morphogenetic protein 4.
     
 0.498
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.487
myl7
Myosin, light chain 7, regulatory.
   
 
 0.473
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.