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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111231538Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b. (1650 aa)    
Predicted Functional Partners:
LOC111238469
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
0.791
LOC111236133
Uncharacterized protein.
   
0.791
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
   
 0.791
CASK-2
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
   
 0.791
GRIN3A
Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
    
0.589
grin2a
Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.
     
 
0.578
LOC111216540
Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.
     
 
0.578
LOC111227336
Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2; Belongs to the protein kinase superfamily.
   
 0.552
camk2b
Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2.
   
 0.552
LOC111223622
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.533
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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