LOC111220996 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111220996

BCL2 like 10. (190 aa)

Predicted Functional Partners:

Bcl2l11

0.955

bad

0.728

apaf1

0.647

becn1

0.632

crcp

0.573

CPQ

0.564

rint1

0.538

bmf

0.501

LOC111216434

0.501

LOC111218420

0.491

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bcl2l11	LOC111216434	ENSSDUP00000027092	ENSSDUP00000020059	Uncharacterized protein.	Uncharacterized protein.	0.430
Bcl2l11	LOC111220996	ENSSDUP00000027092	ENSSDUP00000006166	Uncharacterized protein.	BCL2 like 10.	0.955
Bcl2l11	apaf1	ENSSDUP00000027092	ENSSDUP00000002058	Uncharacterized protein.	Apoptotic peptidase activating factor 1.	0.599
Bcl2l11	bad	ENSSDUP00000027092	ENSSDUP00000029606	Uncharacterized protein.	BCL2 associated agonist of cell death b.	0.752
Bcl2l11	becn1	ENSSDUP00000027092	ENSSDUP00000029998	Uncharacterized protein.	Beclin 1, autophagy related.	0.589
Bcl2l11	bmf	ENSSDUP00000027092	ENSSDUP00000013428	Uncharacterized protein.	Uncharacterized protein.	0.430
CPQ	LOC111220996	ENSSDUP00000022576	ENSSDUP00000006166	Carboxypeptidase Q.	BCL2 like 10.	0.564
CPQ	crcp	ENSSDUP00000022576	ENSSDUP00000027087	Carboxypeptidase Q.	Calcitonin gene-related peptide-receptor component protein.	0.592
LOC111216434	Bcl2l11	ENSSDUP00000020059	ENSSDUP00000027092	Uncharacterized protein.	Uncharacterized protein.	0.430
LOC111216434	LOC111220996	ENSSDUP00000020059	ENSSDUP00000006166	Uncharacterized protein.	BCL2 like 10.	0.501
LOC111218420	LOC111220996	ENSSDUP00000000677	ENSSDUP00000006166	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	BCL2 like 10.	0.491
LOC111218420	apaf1	ENSSDUP00000000677	ENSSDUP00000002058	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Apoptotic peptidase activating factor 1.	0.999
LOC111218420	becn1	ENSSDUP00000000677	ENSSDUP00000029998	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Beclin 1, autophagy related.	0.420
LOC111220996	Bcl2l11	ENSSDUP00000006166	ENSSDUP00000027092	BCL2 like 10.	Uncharacterized protein.	0.955
LOC111220996	CPQ	ENSSDUP00000006166	ENSSDUP00000022576	BCL2 like 10.	Carboxypeptidase Q.	0.564
LOC111220996	LOC111216434	ENSSDUP00000006166	ENSSDUP00000020059	BCL2 like 10.	Uncharacterized protein.	0.501
LOC111220996	LOC111218420	ENSSDUP00000006166	ENSSDUP00000000677	BCL2 like 10.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.491
LOC111220996	apaf1	ENSSDUP00000006166	ENSSDUP00000002058	BCL2 like 10.	Apoptotic peptidase activating factor 1.	0.647
LOC111220996	bad	ENSSDUP00000006166	ENSSDUP00000029606	BCL2 like 10.	BCL2 associated agonist of cell death b.	0.728
LOC111220996	becn1	ENSSDUP00000006166	ENSSDUP00000029998	BCL2 like 10.	Beclin 1, autophagy related.	0.632