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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRSF11Serine and arginine rich splicing factor 11. (459 aa)    
Predicted Functional Partners:
srrm1
Serine/arginine repetitive matrix 1.
   
 0.746
pnisr
Uncharacterized protein.
   
 
 0.744
LOC111234256
Serine and arginine rich splicing factor 9.
   
 0.711
SRSF3
Serine and arginine rich splicing factor 3b.
   
 0.700
LOC111222859
RRM domain-containing protein.
   
 0.700
LOC111219724
Serine and arginine rich splicing factor 2a.
   
0.699
LOC111230261
RRM domain-containing protein.
   
 0.699
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.694
pabpn1
Poly(A) binding protein, nuclear 1.
   
 0.676
ncmap
Uncharacterized protein.
   
 0.672
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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