Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000006253Si:dkeyp-44a8.4. (324 aa)    
Predicted Functional Partners:
ENSSDUP00000008840
Uncharacterized protein.
 
      0.709
emid1
EMI domain-containing protein.
  
  
  0.589
ENSSDUP00000001781
Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.
  
 
   0.531
ENSSDUP00000009109
Uncharacterized protein.
  
     0.531
COLEC12
Collectin subfamily member 12.
  
 
  0.521
ENSSDUP00000032629
Collagen, type XXI, alpha 1.
 
    
 0.503
ENSSDUP00000032616
C-type lectin domain-containing protein.
  
 
  0.495
ENSSDUP00000003081
Si:dkey-225n22.4.
 
    
 0.491
colec11
Collectin sub-family member 11.
  
 
  0.486
col6a1
Collagen, type VI, alpha 1.
  
0.469
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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