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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000006277Uncharacterized protein. (87 aa)    
Predicted Functional Partners:
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
 0.596
prkaca
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily.
   
 
 0.596
LOC111227008
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.
   
 
 0.596
ENSSDUP00000026101
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
 0.596
prkx
Protein kinase X-linked; Belongs to the protein kinase superfamily.
   
 
 0.585
LOC111230565
THAP-type domain-containing protein.
   
 
 0.573
xpo1
Exportin 1 (CRM1 homolog, yeast) a.
    
 
 0.549
ENSSDUP00000001113
Uncharacterized protein.
    
 
 0.549
LOC111220637
Exportin 1 (CRM1 homolog, yeast) b.
    
 
 0.549
pkig
Protein kinase (cAMP-dependent, catalytic) inhibitor gamma.
      
 0.536
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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