Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
igsf9bImmunoglobulin superfamily member 9B. (1435 aa)    
Predicted Functional Partners:
sema7a
Semaphorin 7A; Belongs to the semaphorin family.
    
 
 0.711
LOC111238594
Bloodthirsty-related gene family, member 12.
    
 0.589
ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
    
 0.536
ENSSDUP00000025073
Interleukin-1 receptor-associated kinase 3.
    
 0.536
irf5
Interferon regulatory factor 5.
    
 
 0.428
LOC111226944
Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide.
   
 0.420
ppp1r42
Protein phosphatase 1, regulatory subunit 42.
      
 0.405
LOC111219190
Immunoglobin superfamily, member 21b.
    
 0.401
LOC111233590
Immunoglobin superfamily, member 21a.
    
 0.401
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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