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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam214aFamily with sequence similarity 214 member A. (1100 aa)    
Predicted Functional Partners:
zfand2a
Zinc finger, AN1-type domain 2A.
      
 0.590
WDR7
WD repeat domain 7.
      
 0.581
rsl24d1
Ribosomal L24 domain containing 1.
      
 0.574
capsl
Calcyphosine-like b.
      
 0.556
pigo
Phosphatidylinositol glycan anchor biosynthesis, class O.
      
 0.483
hmg20b
High mobility group 20B.
      
 0.469
mblac1
Metallo-beta-lactamase domain containing 1.
      
 0.450
ap4e1
Adaptor related protein complex 4 subunit epsilon 1.
      
 0.430
kbtbd4
Kelch repeat and BTB (POZ) domain containing 4.
      
 0.422
lmbrd2
LMBR1 domain containing 2b.
      
 0.422
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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