STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111227848Cornichon family AMPA receptor auxiliary protein 4. (142 aa)    
Predicted Functional Partners:
tmed2
Transmembrane p24 trafficking protein 2.
    
 0.766
ENSSDUP00000004737
Uncharacterized protein.
   
 0.745
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.745
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
    
 0.735
LOC111230445
Uncharacterized protein.
    
 0.735
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
   
 0.693
sec24d
SEC24 homolog D, COPII coat complex component.
     
 0.685
LOC111222913
Transforming growth factor, alpha.
     
 0.684
gria4
Glutamate receptor, ionotropic, AMPA 4a.
    
 0.681
LOC111221323
Uncharacterized protein.
    
 0.681
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.