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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111216771Myb_DNA-bind_5 domain-containing protein. (525 aa)    
Predicted Functional Partners:
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
 0.791
ENSSDUP00000000294
PDZ domain-containing protein.
   
 
 0.714
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.714
LOC111227906
Syntaxin binding protein 1b; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.676
stxbp1
Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.676
stxbp2
Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.676
stxbp3
Syntaxin binding protein 3; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.676
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.630
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
     
 0.627
CASK-2
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
     
 0.627
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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