STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111228214WD repeat domain 37. (500 aa)    
Predicted Functional Partners:
wdr48
WD repeat domain 48b.
    
 0.704
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.663
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.647
LOC111221375
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.645
taf10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.644
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.641
tex10
Testis expressed 10.
   
 0.631
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.627
fam76b
Transcription initiation factor TFIID subunit.
   
 0.627
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
   
 0.622
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.