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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111225391Thrombospondin 1a. (1171 aa)    
Predicted Functional Partners:
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.945
LOC111233864
Integrin beta; Belongs to the integrin beta chain family.
   
 0.945
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
   
 0.944
itgb3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.944
LOC111217494
Integrin beta; Belongs to the integrin beta chain family.
   
 0.944
LOC111219496
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.913
ltbp1
Latent transforming growth factor beta binding protein 1.
   
 
 0.906
LOC111236186
Thrombospondin 1b.
  
  
 
0.900
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.806
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
   
 0.791
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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