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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnfsf13bTNF superfamily member 13b; Belongs to the tumor necrosis factor family. (264 aa)    
Predicted Functional Partners:
tnfrsf13b
TNFR-Cys domain-containing protein.
    
 0.938
LOC111232361
CD40 ligand; Belongs to the tumor necrosis factor family.
   
 
 0.833
tnfsf12
TNF superfamily member 12; Belongs to the tumor necrosis factor family.
   
 0.829
LOC111218446
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
   
 0.804
LOC111234934
CD40 molecule, TNF receptor superfamily member 5.
     
 0.738
ltbr
Uncharacterized protein.
   
 
 0.728
LOC111217746
Mitogen-activated protein kinase kinase kinase 14a.
     
 0.714
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.694
LOC111232930
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.694
ENSSDUP00000005311
Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.
     
 0.679
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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