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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111223641SRY-box transcription factor 19b. (307 aa)    
Predicted Functional Partners:
ENSSDUP00000008954
POU domain, class 5, transcription factor 3.
    
 0.716
LOC111238932
POU domain protein.
    
 0.716
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.564
sall4
Spalt-like transcription factor 4.
   
 0.475
LOC111229402
Junction plakoglobin a.
    
 0.441
LOC111222989
Uncharacterized protein.
    
 0.441
LOC111236265
Uncharacterized protein.
    
 0.441
nr5a2
Nuclear receptor subfamily 5, group A, member 2.
    
 0.430
nr5a1
Nuclear receptor subfamily 5, group A, member 1a.
    
 0.430
prdm14
PR domain containing 14.
    
 0.406
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.