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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111237789Nipped-B protein. (2515 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.959
RBM20
RNA binding motif protein 20.
   
 0.919
LOC111229734
Structural maintenance of chromosomes protein.
   
 0.911
smc1a
Structural maintenance of chromosomes protein.
   
 0.911
ENSSDUP00000006786
Uncharacterized protein.
 
      0.900
smc5
SMC_N domain-containing protein.
   
 0.864
pds5b
PDS5 cohesin associated factor B.
   
 0.849
pds5a
PDS5 cohesin associated factor A.
   
 0.849
MAU2
MAU2 sister chromatid cohesion factor.
    
 0.827
LOC111228947
MAU2 sister chromatid cohesion factor.
    
 0.827
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.