taf8 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

taf8

TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (308 aa)

Predicted Functional Partners:

LOC111221375

0.999

taf6

0.999

taf13

0.999

taf11

0.999

taf7l

0.997

taf12

0.997

taf2

0.997

fam76b

0.997

taf10

0.996

taf6l

0.984

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111221375	fam76b	ENSSDUP00000007335	ENSSDUP00000017216	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit.	0.999
LOC111221375	taf10	ENSSDUP00000007335	ENSSDUP00000028805	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC111221375	taf11	ENSSDUP00000007335	ENSSDUP00000026860	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC111221375	taf12	ENSSDUP00000007335	ENSSDUP00000012766	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC111221375	taf13	ENSSDUP00000007335	ENSSDUP00000024965	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 13.	0.999
LOC111221375	taf2	ENSSDUP00000007335	ENSSDUP00000014255	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC111221375	taf6	ENSSDUP00000007335	ENSSDUP00000014023	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC111221375	taf6l	ENSSDUP00000007335	ENSSDUP00000005904	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.977
LOC111221375	taf7l	ENSSDUP00000007335	ENSSDUP00000000904	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.997
LOC111221375	taf8	ENSSDUP00000007335	ENSSDUP00000006793	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
fam76b	LOC111221375	ENSSDUP00000017216	ENSSDUP00000007335	Transcription initiation factor TFIID subunit.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
fam76b	taf10	ENSSDUP00000017216	ENSSDUP00000028805	Transcription initiation factor TFIID subunit.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
fam76b	taf11	ENSSDUP00000017216	ENSSDUP00000026860	Transcription initiation factor TFIID subunit.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
fam76b	taf12	ENSSDUP00000017216	ENSSDUP00000012766	Transcription initiation factor TFIID subunit.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
fam76b	taf13	ENSSDUP00000017216	ENSSDUP00000024965	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 13.	0.999
fam76b	taf2	ENSSDUP00000017216	ENSSDUP00000014255	Transcription initiation factor TFIID subunit.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
fam76b	taf6	ENSSDUP00000017216	ENSSDUP00000014023	Transcription initiation factor TFIID subunit.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
fam76b	taf6l	ENSSDUP00000017216	ENSSDUP00000005904	Transcription initiation factor TFIID subunit.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.983
fam76b	taf7l	ENSSDUP00000017216	ENSSDUP00000000904	Transcription initiation factor TFIID subunit.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
fam76b	taf8	ENSSDUP00000017216	ENSSDUP00000006793	Transcription initiation factor TFIID subunit.	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.997