Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111220687FAM83 domain-containing protein. (1625 aa)    
Predicted Functional Partners:
ciita
NACHT domain-containing protein.
  
     0.463
ccser2
Coiled-coil serine-rich protein 2a.
  
     0.451
LOC111232561
Uncharacterized protein.
  
     0.444
ENSSDUP00000011089
Uncharacterized protein.
  
     0.419
LOC111231469
Uncharacterized protein.
  
     0.414
ENSSDUP00000004649
Junctional cadherin 5 associated a.
  
     0.409
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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