ubl7 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ubl7

Ubiquitin-like 7b (bone marrow stromal cell-derived). (379 aa)

Predicted Functional Partners:

mysm1

0.975

LOC111217580

0.949

itsn2

0.949

rps27a

0.898

LOC111219998

0.896

LOC111236255

0.896

uba52

0.871

LOC111228782

0.871

ubxn7

0.866

trip12

0.865

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111217580	itsn2	ENSSDUP00000001735	ENSSDUP00000016866	Intersectin 2b.	Intersectin 2a.	0.958
LOC111217580	rps27a	ENSSDUP00000001735	ENSSDUP00000004225	Intersectin 2b.	Ribosomal protein S27a.	0.618
LOC111217580	ubl7	ENSSDUP00000001735	ENSSDUP00000006850	Intersectin 2b.	Ubiquitin-like 7b (bone marrow stromal cell-derived).	0.949
LOC111219998	LOC111228782	ENSSDUP00000015051	ENSSDUP00000018383	NBR1 autophagy cargo receptor a.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.944
LOC111219998	LOC111236255	ENSSDUP00000015051	ENSSDUP00000024349	NBR1 autophagy cargo receptor a.	PB1 domain-containing protein.	0.998
LOC111219998	rps27a	ENSSDUP00000015051	ENSSDUP00000004225	NBR1 autophagy cargo receptor a.	Ribosomal protein S27a.	0.999
LOC111219998	uba52	ENSSDUP00000015051	ENSSDUP00000013443	NBR1 autophagy cargo receptor a.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.944
LOC111219998	ubl7	ENSSDUP00000015051	ENSSDUP00000006850	NBR1 autophagy cargo receptor a.	Ubiquitin-like 7b (bone marrow stromal cell-derived).	0.896
LOC111228782	LOC111219998	ENSSDUP00000018383	ENSSDUP00000015051	Ubiquitin A-52 residue ribosomal protein fusion product 1.	NBR1 autophagy cargo receptor a.	0.944
LOC111228782	LOC111236255	ENSSDUP00000018383	ENSSDUP00000024349	Ubiquitin A-52 residue ribosomal protein fusion product 1.	PB1 domain-containing protein.	0.944
LOC111228782	mysm1	ENSSDUP00000018383	ENSSDUP00000031108	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Myb-like, SWIRM and MPN domains 1.	0.971
LOC111228782	rps27a	ENSSDUP00000018383	ENSSDUP00000004225	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.993
LOC111228782	trip12	ENSSDUP00000018383	ENSSDUP00000028582	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Thyroid hormone receptor interactor 12.	0.760
LOC111228782	uba52	ENSSDUP00000018383	ENSSDUP00000013443	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.900
LOC111228782	ubl7	ENSSDUP00000018383	ENSSDUP00000006850	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-like 7b (bone marrow stromal cell-derived).	0.871
LOC111228782	ubxn7	ENSSDUP00000018383	ENSSDUP00000012354	Ubiquitin A-52 residue ribosomal protein fusion product 1.	UBX domain protein 7.	0.951
LOC111236255	LOC111219998	ENSSDUP00000024349	ENSSDUP00000015051	PB1 domain-containing protein.	NBR1 autophagy cargo receptor a.	0.998
LOC111236255	LOC111228782	ENSSDUP00000024349	ENSSDUP00000018383	PB1 domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.944
LOC111236255	rps27a	ENSSDUP00000024349	ENSSDUP00000004225	PB1 domain-containing protein.	Ribosomal protein S27a.	0.999
LOC111236255	uba52	ENSSDUP00000024349	ENSSDUP00000013443	PB1 domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.944