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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ift20Intraflagellar transport 20 homolog (Chlamydomonas). (132 aa)    
Predicted Functional Partners:
trip11
Thyroid hormone receptor interactor 11.
   
 0.979
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.970
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.970
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.959
ift46
Uncharacterized protein.
  
 
 0.945
ift74
Intraflagellar transport 74.
    
 0.942
ift88
Intraflagellar transport 88 homolog.
    
 0.940
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.939
ift172
Intraflagellar transport 172.
    
 0.938
ift81
Intraflagellar transport 81 homolog.
    
 0.936
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.