STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111226126V-SNARE coiled-coil homology domain-containing protein. (95 aa)    
Predicted Functional Partners:
LOC111217580
Intersectin 2b.
     
 0.951
itsn2
Intersectin 2a.
     
 0.951
gak
Cyclin G associated kinase.
   
 
  0.939
STX19
Syntaxin 19.
    
 0.774
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.755
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.755
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.752
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.744
ENSSDUP00000000294
PDZ domain-containing protein.
   
 
 0.731
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.731
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.