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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc13Tetratricopeptide repeat domain 13. (826 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.867
tpgs1
Uncharacterized protein.
      
 0.665
Bbs9
Bardet-Biedl syndrome 9.
    
 0.639
ENSSDUP00000008987
TROVE domain-containing protein.
    
 0.627
bbs7
Bardet-Biedl syndrome 7.
    
 0.617
cdc73
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
    
 0.595
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
    
 0.595
anapc5
Anaphase promoting complex subunit 5.
   
 0.590
ttc8
Tetratricopeptide repeat domain 8.
    
 0.590
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.590
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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