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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217917SH3 and PX domains 2Aa. (1067 aa)    
Predicted Functional Partners:
LOC111228211
Neutrophil cytosolic factor 2.
   
 0.553
LOC111230335
NADPH oxidase activator 1.
   
 0.553
sh3rf3
SH3 domain containing ring finger 3.
   
 0.509
ENSSDUP00000014648
Uncharacterized protein.
   
 0.495
sorbs2
Sorbin and SH3 domain containing 2a.
   
 0.495
ENSSDUP00000025524
Uncharacterized protein.
   
 0.495
LOC111220765
Sorbin and SH3 domain containing 1.
   
 0.495
ENSSDUP00000026236
Uncharacterized protein.
   
 0.495
ENSSDUP00000027586
SH3 domain containing 19.
   
 0.495
LOC111231492
Sorbin and SH3 domain containing 3.
   
 0.495
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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