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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111224223Ankyrin repeat domain 1a (cardiac muscle). (300 aa)    
Predicted Functional Partners:
mtpn
Myotrophin.
  
 
   0.516
ENSSDUP00000010315
ANK_REP_REGION domain-containing protein.
  
     0.510
ANKRD34A
Ankyrin repeat domain 34A.
  
     0.497
Kank1
ANK_REP_REGION domain-containing protein.
  
   
 0.485
LOC111236603
Cyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4).
  
     0.478
ift81
Intraflagellar transport 81 homolog.
    
 0.467
LOC111230280
ANK_REP_REGION domain-containing protein.
  
 
  0.466
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.452
LOC111220240
Ankyrin repeat and SOCS box containing 3.
  
     0.446
ift88
Intraflagellar transport 88 homolog.
   
 0.445
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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