LOC111220746 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111220746

LisH domain-containing protein. (937 aa)

Predicted Functional Partners:

nop56

0.987

nop58

0.981

fbl

0.975

dkc1

0.974

rsl1d1

0.917

polr1b

0.903

trub1

0.895

cebpz

0.878

polr1a

0.864

ltv1

0.863

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111220746	cebpz	ENSSDUP00000007047	ENSSDUP00000017816	LisH domain-containing protein.	CCAAT enhancer binding protein zeta.	0.878
LOC111220746	dkc1	ENSSDUP00000007047	ENSSDUP00000013706	LisH domain-containing protein.	Dyskeratosis congenita 1, dyskerin.	0.974
LOC111220746	fbl	ENSSDUP00000007047	ENSSDUP00000005550	LisH domain-containing protein.	Fibrillarin.	0.975
LOC111220746	ltv1	ENSSDUP00000007047	ENSSDUP00000001431	LisH domain-containing protein.	LTV1 ribosome biogenesis factor.	0.863
LOC111220746	nop56	ENSSDUP00000007047	ENSSDUP00000031332	LisH domain-containing protein.	NOP56 ribonucleoprotein homolog.	0.987
LOC111220746	nop58	ENSSDUP00000007047	ENSSDUP00000011026	LisH domain-containing protein.	NOP58 ribonucleoprotein homolog (yeast).	0.981
LOC111220746	polr1a	ENSSDUP00000007047	ENSSDUP00000020110	LisH domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.864
LOC111220746	polr1b	ENSSDUP00000007047	ENSSDUP00000026901	LisH domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.903
LOC111220746	rsl1d1	ENSSDUP00000007047	ENSSDUP00000011579	LisH domain-containing protein.	Ribosomal L1 domain containing 1.	0.917
LOC111220746	trub1	ENSSDUP00000007047	ENSSDUP00000022544	LisH domain-containing protein.	TruB pseudouridine (psi) synthase family member 1.	0.895
cebpz	LOC111220746	ENSSDUP00000017816	ENSSDUP00000007047	CCAAT enhancer binding protein zeta.	LisH domain-containing protein.	0.878
cebpz	dkc1	ENSSDUP00000017816	ENSSDUP00000013706	CCAAT enhancer binding protein zeta.	Dyskeratosis congenita 1, dyskerin.	0.908
cebpz	fbl	ENSSDUP00000017816	ENSSDUP00000005550	CCAAT enhancer binding protein zeta.	Fibrillarin.	0.859
cebpz	ltv1	ENSSDUP00000017816	ENSSDUP00000001431	CCAAT enhancer binding protein zeta.	LTV1 ribosome biogenesis factor.	0.862
cebpz	nop56	ENSSDUP00000017816	ENSSDUP00000031332	CCAAT enhancer binding protein zeta.	NOP56 ribonucleoprotein homolog.	0.913
cebpz	nop58	ENSSDUP00000017816	ENSSDUP00000011026	CCAAT enhancer binding protein zeta.	NOP58 ribonucleoprotein homolog (yeast).	0.940
cebpz	polr1a	ENSSDUP00000017816	ENSSDUP00000020110	CCAAT enhancer binding protein zeta.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.872
cebpz	polr1b	ENSSDUP00000017816	ENSSDUP00000026901	CCAAT enhancer binding protein zeta.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.903
cebpz	rsl1d1	ENSSDUP00000017816	ENSSDUP00000011579	CCAAT enhancer binding protein zeta.	Ribosomal L1 domain containing 1.	0.958
cebpz	trub1	ENSSDUP00000017816	ENSSDUP00000022544	CCAAT enhancer binding protein zeta.	TruB pseudouridine (psi) synthase family member 1.	0.736