LOC111221510 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111221510

Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b. (412 aa)

Predicted Functional Partners:

pip4p2

0.919

synj1

0.918

LOC111233362

0.917

pip4p1

0.915

inpp5e

0.912

LOC111235327

0.911

LOC111220177

0.911

ocrl

0.907

inpp5b

0.907

ACTN4

0.901

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN4	LOC111221510	ENSSDUP00000004192	ENSSDUP00000007050	Actinin alpha 4.	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	0.901
LOC111220177	LOC111221510	ENSSDUP00000020128	ENSSDUP00000007050	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	0.911
LOC111220177	LOC111233362	ENSSDUP00000020128	ENSSDUP00000014287	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.900
LOC111220177	LOC111235327	ENSSDUP00000020128	ENSSDUP00000018421	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	0.901
LOC111220177	inpp5b	ENSSDUP00000020128	ENSSDUP00000013507	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	Inositol polyphosphate-5-phosphatase B.	0.914
LOC111220177	inpp5e	ENSSDUP00000020128	ENSSDUP00000030917	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	Inositol polyphosphate-5-phosphatase E.	0.914
LOC111220177	ocrl	ENSSDUP00000020128	ENSSDUP00000008201	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	OCRL inositol polyphosphate-5-phosphatase.	0.914
LOC111220177	pip4p1	ENSSDUP00000020128	ENSSDUP00000029214	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.900
LOC111220177	pip4p2	ENSSDUP00000020128	ENSSDUP00000015081	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.900
LOC111220177	synj1	ENSSDUP00000020128	ENSSDUP00000017880	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	Synaptojanin 1.	0.920
LOC111221510	ACTN4	ENSSDUP00000007050	ENSSDUP00000004192	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	Actinin alpha 4.	0.901
LOC111221510	LOC111220177	ENSSDUP00000007050	ENSSDUP00000020128	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	0.911
LOC111221510	LOC111233362	ENSSDUP00000007050	ENSSDUP00000014287	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.917
LOC111221510	LOC111235327	ENSSDUP00000007050	ENSSDUP00000018421	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	0.911
LOC111221510	inpp5b	ENSSDUP00000007050	ENSSDUP00000013507	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	Inositol polyphosphate-5-phosphatase B.	0.907
LOC111221510	inpp5e	ENSSDUP00000007050	ENSSDUP00000030917	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	Inositol polyphosphate-5-phosphatase E.	0.912
LOC111221510	ocrl	ENSSDUP00000007050	ENSSDUP00000008201	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	OCRL inositol polyphosphate-5-phosphatase.	0.907
LOC111221510	pip4p1	ENSSDUP00000007050	ENSSDUP00000029214	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.915
LOC111221510	pip4p2	ENSSDUP00000007050	ENSSDUP00000015081	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).	0.919
LOC111221510	synj1	ENSSDUP00000007050	ENSSDUP00000017880	Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.	Synaptojanin 1.	0.918