LOC111226751 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111226751

Nuclear receptor binding SET domain protein 1a. (1898 aa)

Predicted Functional Partners:

eed

0.691

mre11

0.612

rbbp5

0.589

ash2l

0.588

bard1

0.586

smg1

0.568

tp53bp1

0.551

rad50

0.550

mphosph8

0.542

paxip1

0.526

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111226751	ash2l	ENSSDUP00000007065	ENSSDUP00000032831	Nuclear receptor binding SET domain protein 1a.	Ash2 like, histone lysine methyltransferase complex subunit.	0.588
LOC111226751	bard1	ENSSDUP00000007065	ENSSDUP00000019914	Nuclear receptor binding SET domain protein 1a.	BRCA1 associated RING domain 1.	0.586
LOC111226751	eed	ENSSDUP00000007065	ENSSDUP00000015795	Nuclear receptor binding SET domain protein 1a.	Embryonic ectoderm development.	0.691
LOC111226751	mphosph8	ENSSDUP00000007065	ENSSDUP00000018721	Nuclear receptor binding SET domain protein 1a.	Chromo domain-containing protein.	0.542
LOC111226751	mre11	ENSSDUP00000007065	ENSSDUP00000029727	Nuclear receptor binding SET domain protein 1a.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.612
LOC111226751	paxip1	ENSSDUP00000007065	ENSSDUP00000005180	Nuclear receptor binding SET domain protein 1a.	PAX interacting (with transcription-activation domain) protein 1.	0.526
LOC111226751	rad50	ENSSDUP00000007065	ENSSDUP00000029174	Nuclear receptor binding SET domain protein 1a.	RAD50 homolog, double strand break repair protein.	0.550
LOC111226751	rbbp5	ENSSDUP00000007065	ENSSDUP00000026787	Nuclear receptor binding SET domain protein 1a.	Retinoblastoma binding protein 5.	0.589
LOC111226751	smg1	ENSSDUP00000007065	ENSSDUP00000025222	Nuclear receptor binding SET domain protein 1a.	SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.	0.568
LOC111226751	tp53bp1	ENSSDUP00000007065	ENSSDUP00000026700	Nuclear receptor binding SET domain protein 1a.	Tumor protein p53 binding protein, 1.	0.551
ash2l	LOC111226751	ENSSDUP00000032831	ENSSDUP00000007065	Ash2 like, histone lysine methyltransferase complex subunit.	Nuclear receptor binding SET domain protein 1a.	0.588
ash2l	paxip1	ENSSDUP00000032831	ENSSDUP00000005180	Ash2 like, histone lysine methyltransferase complex subunit.	PAX interacting (with transcription-activation domain) protein 1.	0.942
ash2l	rbbp5	ENSSDUP00000032831	ENSSDUP00000026787	Ash2 like, histone lysine methyltransferase complex subunit.	Retinoblastoma binding protein 5.	0.999
bard1	LOC111226751	ENSSDUP00000019914	ENSSDUP00000007065	BRCA1 associated RING domain 1.	Nuclear receptor binding SET domain protein 1a.	0.586
bard1	mphosph8	ENSSDUP00000019914	ENSSDUP00000018721	BRCA1 associated RING domain 1.	Chromo domain-containing protein.	0.591
bard1	mre11	ENSSDUP00000019914	ENSSDUP00000029727	BRCA1 associated RING domain 1.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.980
bard1	paxip1	ENSSDUP00000019914	ENSSDUP00000005180	BRCA1 associated RING domain 1.	PAX interacting (with transcription-activation domain) protein 1.	0.916
bard1	rad50	ENSSDUP00000019914	ENSSDUP00000029174	BRCA1 associated RING domain 1.	RAD50 homolog, double strand break repair protein.	0.969
bard1	tp53bp1	ENSSDUP00000019914	ENSSDUP00000026700	BRCA1 associated RING domain 1.	Tumor protein p53 binding protein, 1.	0.880
eed	LOC111226751	ENSSDUP00000015795	ENSSDUP00000007065	Embryonic ectoderm development.	Nuclear receptor binding SET domain protein 1a.	0.691