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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217900Sortilin related VPS10 domain containing receptor 1. (971 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
     
 0.940
ENSSDUP00000007164
Uncharacterized protein.
 
      0.899
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
     
 0.587
LOC111218944
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 
 0.540
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.529
igf2r
Insulin-like growth factor 2 receptor.
    
 0.523
psmb1
Proteasome subunit beta.
    
 
 0.495
psma1
Proteasome subunit alpha type.
    
 
 0.495
psma8
Proteasome subunit alpha type.
    
 
 0.495
nts
Neurotensin.
    
 
 0.458
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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