STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111230121Uncharacterized protein. (1120 aa)    
Predicted Functional Partners:
LOC111230068
CD4-1 molecule.
    
  0.901
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.867
ENSSDUP00000008987
TROVE domain-containing protein.
    
 0.627
cdc73
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
    
 0.595
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
    
 0.595
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.590
anapc4
Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.
    
 0.589
anapc1
Anaphase promoting complex subunit 1.
    
 0.588
anapc5
Anaphase promoting complex subunit 5.
   
 0.586
anapc2
Anaphase promoting complex subunit 2; Belongs to the cullin family.
   
 0.572
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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