Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oit3Oncoprotein induced transcript 3. (539 aa)    
Predicted Functional Partners:
LOC111228869
MAP6 domain containing 1.
    
 0.620
med24
Mediator complex subunit 24.
    
 0.553
dym
Dymeclin.
      
 0.520
mcu
Mitochondrial calcium uniporter.
 
    
 0.519
pgbd5
PiggyBac transposable element derived 5.
    
 
 0.504
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.459
tcf25
Transcription factor 25 (basic helix-loop-helix).
    
 
 0.444
PLA2G12B
Phospholipase A2 group XIIB.
   
 0.433
txndc16
Thioredoxin domain containing 16.
    
 0.424
MCUB
Mitochondrial calcium uniporter dominant negative beta subunit.
      
 0.420
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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