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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabpaGA binding protein transcription factor subunit alpha. (440 aa)    
Predicted Functional Partners:
gabpb2
GA binding protein transcription factor subunit beta 2a.
   
 0.957
ENSSDUP00000002061
ANK_REP_REGION domain-containing protein.
   
 0.957
atp5pf
ATP synthase-coupling factor 6, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain; Belongs to the eukaryotic ATPase subunit F6 family.
      
 0.654
tfam
Transcription factor A, mitochondrial.
   
 
 0.650
Mettl23
Methyltransferase like 23.
      
 0.587
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
   
 0.566
LOC111228086
Si:ch211-140m22.7.
      
 0.558
nrf1
Nuclear respiratory factor 1.
     
 0.491
polrmt
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
     
 0.460
polg2
Polymerase (DNA directed), gamma 2, accessory subunit.
     
 0.435
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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