STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smug1Single-strand-selective monofunctional uracil-DNA glycosylase 1. (309 aa)    
Predicted Functional Partners:
adat3
Adenosine deaminase tRNA specific 3.
   
 0.963
tyms
Thymidylate synthetase.
  
 
 0.901
uprt
Uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae).
   
 0.862
tk1
Thymidine kinase.
    
 0.849
oat
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
  0.768
nags
N-acetylglutamate synthase.
    
  0.765
hddc2
HD domain containing 2.
   
 
  0.754
apex1
DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.
   
 
 0.734
LOC111240130
5'-nucleotidase ecto.
    
 0.721
NT5E
5'-nucleotidase ecto; Belongs to the 5'-nucleotidase family.
    
 0.721
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.