STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccnt1Cyclin T1; Belongs to the cyclin family. (700 aa)    
Predicted Functional Partners:
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
   
 0.969
aff4
AF4/FMR2 family, member 4.
   
 0.932
cdk13
Cyclin-dependent kinase 13.
   
 0.829
cdk12
Cyclin-dependent kinase 12.
   
 0.829
ENSSDUP00000033101
Uncharacterized protein.
   
 0.829
supt5h
Transcription elongation factor SPT5.
   
 0.785
larp7
La ribonucleoprotein domain family, member 7.
   
 0.755
supt4h1
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.746
nelfe
Negative elongation factor complex member E.
    
 0.731
ENSSDUP00000009098
Uncharacterized protein.
   
 
 0.721
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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