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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111231510Uncharacterized protein. (881 aa)    
Predicted Functional Partners:
ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.970
LOC111233175
Low density lipoprotein receptor adaptor protein 1a.
    
 0.949
ENSSDUP00000011356
PID domain-containing protein.
    
 0.928
LOC111235681
Si:dkey-19b23.8.
    
 0.926
LOC111238834
Si:dkey-71h2.2.
    
 0.926
ldlr
Low density lipoprotein receptor a.
  
  
 
0.902
RELN
Reelin.
    
 0.827
pcsk9
Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family.
    
 0.804
LOC111228899
DAB adaptor protein 1b.
    
 0.679
dab1
DAB adaptor protein 1a.
    
 0.679
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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