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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl13bADP-ribosylation factor-like 13b. (400 aa)    
Predicted Functional Partners:
pde6d
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]
     
 0.938
inpp5e
Inositol polyphosphate-5-phosphatase E.
     
 0.936
ift88
Intraflagellar transport 88 homolog.
    
 0.823
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 0.780
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 
 0.744
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.713
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.709
ift81
Intraflagellar transport 81 homolog.
    
 
 0.697
cplane2
Ciliogenesis and planar polarity effector 2.
    
 0.696
ift46
Uncharacterized protein.
    
 
 0.695
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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