Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111220056Uncharacterized protein. (444 aa)    
Predicted Functional Partners:
serpine1
Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family.
   
 0.943
serpine2
Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family.
   
 0.867
plg
Plasminogen; Belongs to the peptidase S1 family.
    
 0.811
LOC111221390
SERPIN domain-containing protein; Belongs to the serpin family.
    
 0.683
serpinf2
SERPIN domain-containing protein; Belongs to the serpin family.
    
 0.683
pdgfc
Platelet derived growth factor c; Belongs to the PDGF/VEGF growth factor family.
    
 0.664
LOC111223183
Protein S100; Belongs to the S-100 family.
   
 0.657
pdgfd
Platelet derived growth factor d; Belongs to the PDGF/VEGF growth factor family.
     
 0.606
LOC111237521
Fibrinogen alpha chain.
   
 0.605
LOC111225366
Annexin.
   
 0.592
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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