STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankra2Ankyrin repeat, family A (RFXANK-like), 2. (317 aa)    
Predicted Functional Partners:
rfxap
Regulatory factor X-associated protein.
    
 
 0.705
LOC111227422
Uncharacterized protein.
    
 0.624
lrp4
Low density lipoprotein receptor-related protein 4.
    
 0.624
lrp2
Low density lipoprotein receptor-related protein 2a.
    
 0.624
ENSSDUP00000028691
Si:dkey-88l16.3.
    
 0.624
ENSSDUP00000028719
Uncharacterized protein.
    
 0.624
LOC111220094
Low density lipoprotein receptor-related protein 2b.
    
 0.624
HDAC4
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
    
 0.515
hdac4
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
    
 0.515
ankrd49
Ankyrin repeat domain 49.
  
    0.509
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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